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Fig. 6.
Segmentation workflow for DG nuclei.
(A) Slice through exemplary 3D input data (CB configuration), (Top) without and (Bottom) with mask annotations.
(B) Three-dimensional rendering of the mask, within a cubic volume of side length 400 μm.
(C) Flow diagram illustrating the steps of segmentation.
(D) To each masked object (DG cell nucleus), a number of properties can be attributed, resulting in respective histograms.
(Scale bar: 100 μm.)


Publications

Three-dimensional virtual histology of the human hippocampus based on phase-contrast computed tomography

Eckermann M, Schmitzer B, van der Meer F, Franz J, Hansen O, Stadelmann C, Salditt T - Proceedings of the National Academy of Sciences - 2021


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Three-dimensional virtual histology of the human hippocampus based on phase-contrast computed tomography

Eckermann M, Schmitzer B, van der Meer F, Franz J, Hansen O, Stadelmann C, Salditt T - Proceedings of the National Academy of Sciences - 2021


IMAGED OBJECTS
segmented DG nuclei, human hippocampus

bio-medical tomography Image

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